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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
500
ChIP-seq
184
total RNA-seq
21
ATAC-seq
3
DNase-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
2
WGBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
500
DNA binding
188
Transcription
24
DNA accessibility
3
3D chromatin structure
2
DNA methylation
1
DNA sequencing
Target of assay
334
transcription factor
96
control
82
recombinant protein
67
histone
67
histone modification
58
RNA binding protein
45
narrow histone mark
23
chromatin remodeller
22
broad histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
August, 2017
53
November, 2018
40
May, 2022
31
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
643
bam
593
bigWig
437
fastq
417
bed narrowPeak
350
bigBed narrowPeak
169
tsv
62
tagAlign
61
bed broadPeak
61
bigBed broadPeak
4
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
723
Homo sapiens
Biosample type
401
cell line
307
tissue
15
in vitro differentiated cells
primary cell
Organ
723
liver
520
connective tissue
453
pancreas
432
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
61
blood
61
bodily fluid
56
eye
56
musculature of body
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
723
AMP
Genome assembly (visualization)
592
hg19
501
GRCh38
Lab
652
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2017
biosample_type!
primary cell
organ_slims!
thymus
BIOSAMPLE
ASSAY
723 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
WGBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
2
1
1
tissue
liver
97
167
20
2
1
1
1
1
right lobe of liver
10
3
1
2
1
in vitro differentiated cells
hepatocyte
15
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