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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
Assay category
98
DNA binding
Target of assay
619
histone
619
histone modification
459
transcription factor
333
narrow histone mark
286
broad histone mark
271
control
98
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
34
November, 2017
21
November, 2018
11
October, 2018
August, 2017
6
January, 2019
5
May, 2021
5
May, 2024
4
April, 2019
4
December, 2017
4
May, 2019
2
December, 2018
1
August, 2021
1
November, 2019
Available data
90
bed narrowPeak
90
bigWig
87
bam
83
bigBed narrowPeak
78
fastq
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
98
Homo sapiens
Biosample type
65
cell line
26
tissue
primary cell
7
in vitro differentiated cells
Organ
58
liver
10
blood
10
bodily fluid
10
heart
7
pancreas
5
adipose tissue
5
connective tissue
3
blood vessel
3
epithelium
3
vasculature
1
artery
1
kidney
Project
98
AMP
Genome assembly (visualization)
85
GRCh38
84
hg19
Lab
87
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
month_released!
August, 2017
biosample_type!
primary cell
organ_slims!
thymus
BIOSAMPLE
ASSAY
98 results
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Clear Filters
ChIP-seq
cell line
HepG2
54
GM12878
10
EndoC_BH1
1
tissue
body of pancreas
5
left cardiac atrium
5
heart left ventricle
3
omental fat pad
3
subcutaneous adipose tissue
2
+ See 8 more…
in vitro differentiated cells
embryonic stem cell
5
hepatocyte
2
See all biosamples
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