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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
318
ChIP-seq
Assay category
318
DNA binding
Target of assay
584
histone
584
histone modification
454
transcription factor
318
narrow histone mark
271
control
266
broad histone mark
93
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
132
October, 2019
August, 2017
35
November, 2017
33
May, 2019
27
May, 2020
23
April, 2019
16
December, 2017
12
May, 2021
11
October, 2018
9
August, 2021
8
February, 2018
4
November, 2019
3
January, 2019
3
March, 2020
2
October, 2017
Available data
275
bigWig
274
bed narrowPeak
272
bam
117
bigBed narrowPeak
103
tagAlign
40
fastq
11
bed broadPeak
6
bigBed broadPeak
5
bed bed3+
1
tagAlign bed3+
Organism
318
Homo sapiens
Biosample type
259
tissue
primary cell
39
in vitro differentiated cells
19
cell line
1
stem cell
Organ
114
brain
45
liver
24
pancreas
23
heart
18
blood vessel
18
vasculature
15
limb
14
epithelium
10
kidney
8
embryo
8
nerve
6
artery
4
gonad
4
ovary
2
eye
2
musculature of body
2
spleen
1
blood
1
bodily fluid
1
connective tissue
1
lymph node
1
pituitary gland
Project
314
AMP
4
T1D
Genome assembly (visualization)
263
GRCh38
261
hg19
Lab
306
AMP-T2D consortium
10
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
9
inconsistent control read length
month_released!
August, 2017
biosample_type!
primary cell
BIOSAMPLE
ASSAY
318 results
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Clear Filters
ChIP-seq
tissue
liver
29
islet of Langerhans
23
kidney
10
heart left ventricle
9
layer of hippocampus
8
+ See 95 more…
in vitro differentiated cells
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
Hepatic endoderm
2
+ See 6 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
3
GM12878
1
stem cell
hESC
1
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