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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
Assay category
Transcription
131
DNA binding
42
DNA accessibility
4
3D chromatin structure
Target of assay
75
histone
75
histone modification
39
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
August, 2017
48
May, 2021
43
December, 2017
35
August, 2021
24
February, 2018
12
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
1
August, 2018
Available data
110
bam
89
bed narrowPeak
84
bigWig
72
fastq
26
tagAlign
18
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
2
tsv
Organism
188
Homo sapiens
Biosample type
1315
tissue
593
primary cell
547
cell line
188
in vitro differentiated cells
8
stem cell
Organ
23
embryo
22
epithelium
20
connective tissue
15
liver
3
pancreas
1
adipose tissue
Project
188
AMP
Genome assembly (visualization)
121
hg19
89
GRCh38
4
hg18
Lab
139
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
24
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
August, 2017
assay_slims!
Transcription
BIOSAMPLE
ASSAY
188 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
in vitro differentiated cells
embryonic stem cell
40
6
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
adipocyte
8
1
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