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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
9
total RNA-seq
4
GRO-seq
3
pCHi-C
2
single cell RNA-seq
Assay category
60
DNA binding
11
Transcription
Target of assay
25
control
23
histone
23
histone modification
12
broad histone mark
12
transcription factor
11
narrow histone mark
5
RNA binding protein
Date released
43
May, 2021
August, 2017
9
August, 2021
8
February, 2018
5
December, 2017
4
February, 2023
4
January, 2018
2
December, 2019
2
March, 2020
1
August, 2018
Available data
22
bam
18
fastq
9
tagAlign
5
bigWig
4
tsv
1
bed narrowPeak
1
bedpe bed3+
Organism
78
Homo sapiens
Biosample type
878
tissue
448
primary cell
132
cell line
78
in vitro differentiated cells
7
stem cell
Organ
8
embryo
5
connective tissue
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
78
AMP
Genome assembly (visualization)
hg19
216
GRCh38
4
hg18
Lab
42
Kyle Gaulton, UCSD
36
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
month_released!
August, 2017
assembly!
hg19
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
total RNA-seq
GRO-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
5
1
neural progenitor cell
9
pancreatic endoderm
5
1
cardiomyocytes (cardiac muscle cell)
1
2
Hepatic endoderm
2
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