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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
72
ChIP-seq
17
ATAC-seq
Assay category
127
Transcription
72
DNA binding
17
DNA accessibility
Target of assay
53
histone
53
histone modification
28
narrow histone mark
25
broad histone mark
15
transcription factor
4
control
2
RNA binding protein
1
chromatin remodeller
Date released
84
May, 2021
August, 2017
38
December, 2017
31
February, 2018
30
August, 2021
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
216
bam
195
bigWig
127
tsv
85
bed narrowPeak
69
fastq
18
tagAlign
14
bigBed narrowPeak
12
bed bed3+
Organism
216
Homo sapiens
Biosample type
1661
tissue
494
primary cell
464
cell line
216
in vitro differentiated cells
3
stem cell
Organ
21
embryo
20
epithelium
14
liver
5
connective tissue
2
pancreas
1
heart
Project
216
AMP
Genome assembly (visualization)
248
hg19
216
GRCh38
4
hg18
Lab
216
AMP-T2D consortium
Audit category:
99
inconsistent ontology term
Audit category:
11
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
216 results
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total RNA-seq
ChIP-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
13
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
13
hepatocyte
14
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