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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
71
ChIP-seq
42
ATAC-seq
4
Hi-C
2
Capture-C
2
pCHi-C
Assay category
127
Transcription
71
DNA binding
42
DNA accessibility
4
3D chromatin structure
Target of assay
52
histone
52
histone modification
28
narrow histone mark
24
broad histone mark
15
transcription factor
4
control
2
RNA binding protein
1
chromatin remodeller
Date released
89
May, 2021
August, 2017
38
December, 2017
33
August, 2021
31
February, 2018
26
February, 2021
12
February, 2023
8
October, 2019
6
March, 2020
5
November, 2019
Available data
215
bam
206
bigWig
127
tsv
88
bed narrowPeak
69
fastq
18
bed bed3+
17
tagAlign
16
bigBed narrowPeak
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
248
Homo sapiens
Biosample type
1575
tissue
581
primary cell
530
cell line
248
in vitro differentiated cells
3
stem cell
Organ
24
connective tissue
21
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
248
AMP
Genome assembly (visualization)
248
hg19
216
GRCh38
4
hg18
Lab
236
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
108
inconsistent ontology term
Audit category:
11
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
248 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
Capture-C
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
12
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
13
hepatocyte
14
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