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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
42
ATAC-seq
9
total RNA-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
Capture-C
Assay category
131
DNA binding
42
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
75
histone
75
histone modification
39
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
August, 2017
53
May, 2021
43
December, 2017
35
August, 2021
24
February, 2018
16
February, 2023
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
4
March, 2020
1
August, 2018
Available data
237
bam
211
bigWig
tsv
89
bed narrowPeak
87
fastq
26
tagAlign
18
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
195
Homo sapiens
Biosample type
1466
tissue
759
primary cell
543
cell line
195
in vitro differentiated cells
6
stem cell
Organ
24
connective tissue
23
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
195
AMP
Genome assembly (visualization)
121
hg19
89
GRCh38
4
hg18
Lab
141
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
25
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
August, 2017
files.file_type!
tsv
BIOSAMPLE
ASSAY
195 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
in vitro differentiated cells
embryonic stem cell
40
6
5
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
adipocyte
8
1
1
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