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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
total RNA-seq
109
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
136
Transcription
109
DNA binding
42
DNA accessibility
4
3D chromatin structure
Target of assay
60
histone
60
histone modification
31
narrow histone mark
29
broad histone mark
25
control
24
transcription factor
5
RNA binding protein
Date released
127
May, 2021
August, 2017
42
August, 2021
39
February, 2018
26
February, 2021
24
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
213
bam
191
bigWig
129
tsv
71
bed narrowPeak
68
fastq
23
tagAlign
18
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
bigBed narrowPeak
2
ibed
Organism
302
Homo sapiens
Biosample type
2438
tissue
652
primary cell
583
cell line
302
in vitro differentiated cells
10
stem cell
Organ
29
connective tissue
29
embryo
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
302
AMP
Genome assembly (visualization)
228
hg19
196
GRCh38
4
hg18
Lab
248
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
10
inconsistent control read length
month_released!
August, 2017
organ_slims!
epithelium
BIOSAMPLE
ASSAY
302 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
cardiac precursors (cardiac muscle cell)
19
1
1
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