Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ATAC-seq
53
total RNA-seq
47
WGBS
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
69
DNA accessibility
53
DNA methylation
53
Transcription
8
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
38
February, 2023
19
September, 2020
16
May, 2021
8
July, 2019
7
August, 2020
6
February, 2021
6
November, 2020
3
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
1
November, 2019
Available data
bam
284
bigWig
228
fastq
153
tsv
122
bed narrowPeak
80
zippedFastqFolder
73
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
191
Homo sapiens
Biosample type
164
primary cell
28
cell line
tissue
Organ
192
epithelium
181
pancreas
37
liver
28
connective tissue
9
blood
9
bodily fluid
9
kidney
5
vasculature
4
blood vessel
4
brain
2
vein
1
adipose tissue
1
bone element
1
bone marrow
1
embryo
1
eye
1
heart
1
mammary gland
1
musculature of body
Project
152
HPAP
40
AMP
Genome assembly (visualization)
16
hg19
10
GRCh38
Lab
152
Klaus Kaestner, Upenn
34
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
4
audit script error
month_released!
August, 2017
files.file_type!
bam
biosample_type!
tissue
BIOSAMPLE
ASSAY
192 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
WGBS
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
+ See 9 more…
cell line
EndoC_BH1
18
1
6
2
1
See all biosamples
Download