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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1247
total RNA-seq
1054
ChIP-seq
500
ATAC-seq
368
single cell RNA-seq
87
RNA microarray
83
snATAC-seq
64
WGBS
53
pCHi-C
26
Hi-C
15
small RNA-seq
14
RRBS
10
MeRIP-seq
5
GRO-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
STARR-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
64
DNA methylation
Date released
41
May, 2022
11
July, 2019
August, 2017
6
February, 2021
6
November, 2018
Available data
41
zippedFastqFolder
15
bam
14
bed bedMethyl
14
bigBed bedMethyl
14
bigWig
12
fastq
6
tsv
Organism
64
Homo sapiens
Biosample type
47
primary cell
17
tissue
Organ
51
pancreas
47
epithelium
8
heart
2
blood vessel
liver
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
17
AMP
Genome assembly (visualization)
14
GRCh38
Lab
47
Klaus Kaestner, Upenn
17
AMP-T2D consortium
month_released!
August, 2017
files.file_type!
bed bed3+
organ_slims!
liver
BIOSAMPLE
ASSAY
64 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
aorta
2
body of pancreas
2
heart right ventricle
2
pancreas
2
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