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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
4
ATAC-seq
3
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
4
DNA accessibility
Date released
386
February, 2021
August, 2017
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2019
Available data
425
bam
408
bigWig
401
tsv
fastq
10
bed narrowPeak
8
bigBed narrowPeak
2
bed bed3+
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
406
Homo sapiens
Biosample type
405
tissue
2
primary cell
Organ
523
connective tissue
450
pancreas
407
adipose tissue
363
heart
298
liver
276
kidney
249
epithelium
229
brain
217
vasculature
216
blood vessel
159
bone element
137
artery
86
limb
57
eye
41
nerve
37
musculature of body
20
lung
18
vein
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
407
AMP
Genome assembly (visualization)
403
hg19
400
GRCh38
Lab
407
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
August, 2017
files.file_type!
fastq
bed broadPeak
BIOSAMPLE
ASSAY
407 results
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total RNA-seq
ATAC-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
3
1
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
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