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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
DNase-seq
8
ChIP-seq
Assay category
27
DNA accessibility
8
DNA binding
Target of assay
5
histone
5
histone modification
3
RNA binding protein
3
narrow histone mark
3
transcription factor
2
broad histone mark
Date released
24
June, 2019
August, 2017
6
November, 2017
4
October, 2019
1
November, 2020
Available data
567
bigWig
551
bam
351
fastq
270
tsv
262
bed narrowPeak
153
zippedFastqFolder
90
bigBed narrowPeak
88
tagAlign
37
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
35
Homo sapiens
Biosample type
187
tissue
59
cell line
35
primary cell
Organ
22
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
6
connective tissue
4
vein
3
heart
2
liver
1
eye
1
musculature of body
Project
35
AMP
Genome assembly (visualization)
33
GRCh38
28
hg19
Lab
35
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
35 results
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DNase-seq
ChIP-seq
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
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