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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
DNase-seq
66
ChIP-seq
Assay category
181
DNA accessibility
66
DNA binding
Target of assay
47
transcription factor
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
164
June, 2019
64
November, 2017
August, 2017
9
November, 2018
9
October, 2019
1
November, 2020
Available data
2746
bam
2746
bigWig
1456
bed narrowPeak
1313
tsv
921
bigBed narrowPeak
753
fastq
257
bed broadPeak
247
bigBed broadPeak
217
bed bed3+
200
tagAlign
22
hic
21
bedpe bed3+
15
bed bedMethyl
15
bigBed bedMethyl
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
247
Homo sapiens
Biosample type
160
tissue
59
cell line
28
primary cell
Organ
71
kidney
63
liver
36
limb
33
musculature of body
28
brain
27
heart
18
ureter
16
epithelium
16
vasculature
12
blood vessel
7
connective tissue
5
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
247
AMP
Genome assembly (visualization)
254
GRCh38
247
hg19
Lab
247
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
247 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
muscle of arm
17
heart
16
brain
14
kidney
13
muscle of leg
13
+ See 28 more…
cell line
HepG2
58
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
cardiac fibroblast
2
+ See 13 more…
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