Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
28
DNase-seq
Assay category
66
DNA binding
28
DNA accessibility
Target of assay
47
transcription factor
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
24
June, 2019
August, 2017
5
October, 2019
1
November, 2020
Available data
1373
bam
1303
bigWig
869
fastq
757
bed narrowPeak
524
tsv
461
bigBed narrowPeak
153
zippedFastqFolder
134
tagAlign
94
bed broadPeak
94
bigBed broadPeak
61
bed bed3+
13
bedpe bed3+
12
hic
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
94
Homo sapiens
Biosample type
tissue
59
cell line
35
primary cell
Organ
60
liver
22
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
6
connective tissue
4
vein
3
heart
1
eye
1
musculature of body
1
pancreas
Project
94
AMP
Genome assembly (visualization)
87
hg19
78
GRCh38
Lab
94
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
month_released!
August, 2017
biosample_type!
tissue
BIOSAMPLE
ASSAY
94 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
cardiac fibroblast
3
choroid plexus epithelial cell
2
1
+ See 17 more…
See all biosamples
Download