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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
59
ChIP-seq
Assay category
204
DNA accessibility
59
DNA binding
Target of assay
47
transcription factor
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
57
November, 2017
August, 2017
9
November, 2018
9
October, 2019
1
November, 2020
Available data
3015
bam
2764
bigWig
1542
bed narrowPeak
1511
tsv
990
fastq
909
bigBed narrowPeak
313
tagAlign
274
bed broadPeak
263
bigBed broadPeak
240
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
263
Homo sapiens
Biosample type
176
tissue
55
cell line
32
primary cell
Organ
78
kidney
59
liver
36
limb
35
brain
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
12
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
263
AMP
Genome assembly (visualization)
248
GRCh38
240
hg19
Lab
263
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
11
inconsistent control read length
month_released!
August, 2017
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
263 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
54
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 17 more…
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