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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
808
total RNA-seq
475
ChIP-seq
171
DNase-seq
38
ATAC-seq
16
small RNA-seq
13
WGBS
3
FAIRE-seq
Assay category
824
Transcription
475
DNA binding
212
DNA accessibility
13
DNA methylation
Target of assay
408
histone
408
histone modification
224
narrow histone mark
184
broad histone mark
67
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
August, 2017
170
May, 2020
160
June, 2019
139
October, 2019
116
July, 2018
65
April, 2019
57
July, 2019
57
November, 2017
54
May, 2019
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
23
November, 2018
20
May, 2022
19
November, 2019
14
October, 2017
10
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1650
bam
1524
bigWig
973
tsv
818
bed narrowPeak
477
bigBed narrowPeak
202
fastq
182
bed broadPeak
179
tagAlign
174
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1524
Homo sapiens
Biosample type
1524
tissue
543
primary cell
466
cell line
211
in vitro differentiated cells
3
stem cell
Organ
464
connective tissue
406
adipose tissue
247
liver
243
pancreas
202
brain
157
heart
91
kidney
91
limb
blood vessel
70
vasculature
58
bone element
44
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1522
AMP
2
T1D
Genome assembly (visualization)
1485
GRCh38
1402
hg19
Lab
1463
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
1524 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
FAIRE-seq
tissue
adipose tissue
381
2
liver
147
65
2
20
1
islet of Langerhans
177
2
3
bone tissue
58
left cardiac atrium
40
1
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