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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
609
ChIP-seq
139
total RNA-seq
128
single cell RNA-seq
56
ATAC-seq
27
snATAC-seq
13
WGBS
9
DNase-seq
1
FAIRE-seq
1
GRO-seq
1
Hi-C
Assay category
609
DNA binding
267
Transcription
93
DNA accessibility
13
DNA methylation
1
3D chromatin structure
Target of assay
396
transcription factor
121
control
87
histone
87
histone modification
82
recombinant protein
79
RNA binding protein
50
broad histone mark
37
narrow histone mark
32
chromatin remodeller
5
other context
5
other post-translational modification
Date released
324
November, 2017
August, 2017
88
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
51
December, 2017
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
3
August, 2018
3
June, 2018
1
January, 2018
1
March, 2019
Available data
2873
bam
2646
bigWig
1546
bed narrowPeak
1380
tsv
984
bigBed narrowPeak
984
fastq
287
tagAlign
281
bed broadPeak
270
bigBed broadPeak
222
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
984
Homo sapiens
Biosample type
427
cell line
351
primary cell
202
tissue
in vitro differentiated cells
4
stem cell
Organ
422
liver
303
pancreas
209
epithelium
60
blood
60
bodily fluid
28
connective tissue
25
adipose tissue
24
spleen
21
brain
6
vasculature
3
blood vessel
Project
815
AMP
169
HPAP
Genome assembly (visualization)
684
hg19
633
GRCh38
1
hg18
Lab
789
AMP-T2D consortium
169
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
27
audit script error
7
inconsistent ontology term
Audit category:
49
missing controlled_by
Audit category:
29
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2017
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
984 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
FAIRE-seq
GRO-seq
Hi-C
cell line
HepG2
360
5
1
1
GM12878
60
primary cell
pancreatic alpha cell
52
12
12
6
Langerhans cell
34
27
pancreatic beta cell
21
12
9
exocrine cell
39
pancreatic ductal cell
13
4
9
4
+ See 17 more…
tissue
liver
42
2
body of pancreas
33
4
2
2
islet of Langerhans
6
14
20
spleen
20
1
2
1
omental fat pad
11
1
1
+ See 5 more…
stem cell
hESC
3
1
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