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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
287
ChIP-seq
Assay category
287
DNA binding
Target of assay
233
histone
233
histone modification
137
narrow histone mark
96
broad histone mark
49
control
5
transcription factor
Date released
84
May, 2021
78
November, 2017
August, 2017
50
May, 2020
49
October, 2019
14
October, 2017
8
February, 2021
4
August, 2021
Available data
2873
bam
2646
bigWig
1546
bed narrowPeak
1380
tsv
984
bigBed narrowPeak
984
fastq
287
tagAlign
281
bed broadPeak
270
bigBed broadPeak
222
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
287
Homo sapiens
Biosample type
179
tissue
88
primary cell
in vitro differentiated cells
20
cell line
Organ
118
brain
66
liver
6
artery
6
blood vessel
6
heart
6
vasculature
4
epithelium
1
pituitary gland
Project
203
AMP
84
T1D
Genome assembly (visualization)
211
GRCh38
183
hg19
Lab
203
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
August, 2017
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
287 results
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Clear Filters
ChIP-seq
tissue
liver
50
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
brain
14
+ See 39 more…
primary cell
monocyte
84
hepatocyte
4
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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