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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
ChIP-seq
Assay category
289
DNA binding
Target of assay
231
histone
231
histone modification
136
narrow histone mark
95
broad histone mark
49
control
9
transcription factor
Date released
90
May, 2021
August, 2017
78
November, 2017
50
May, 2020
49
October, 2019
August, 2021
14
October, 2017
8
February, 2021
Available data
3061
bam
2810
bigWig
1529
bed narrowPeak
1388
tsv
1071
fastq
1000
bigBed narrowPeak
289
tagAlign
281
bed broadPeak
270
bigBed broadPeak
235
bed bed3+
153
zippedFastqFolder
104
txt
30
bed bedMethyl
30
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
289
Homo sapiens
Biosample type
179
tissue
84
primary cell
20
cell line
6
in vitro differentiated cells
Organ
118
brain
62
liver
6
artery
6
blood vessel
6
heart
6
vasculature
3
epithelium
3
pancreas
1
pituitary gland
Project
205
AMP
84
T1D
Genome assembly (visualization)
213
GRCh38
185
hg19
Lab
205
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
August, 2017
August, 2021
BIOSAMPLE
ASSAY
289 results
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Clear Filters
ChIP-seq
tissue
liver
50
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
brain
14
+ See 39 more…
primary cell
monocyte
84
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
in vitro differentiated cells
cardiomyocytes
3
pancreatic PP cell
3
See all biosamples
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