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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
Assay category
247
DNA binding
Target of assay
206
histone
206
histone modification
111
narrow histone mark
95
broad histone mark
32
control
9
transcription factor
Date released
90
May, 2021
66
November, 2017
August, 2017
49
October, 2019
20
August, 2021
14
October, 2017
8
February, 2021
Available data
2455
bam
2253
bigWig
1337
tsv
1212
bed narrowPeak
648
bigBed narrowPeak
634
fastq
247
tagAlign
230
bed bed3+
218
bed broadPeak
207
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
247
Homo sapiens
Biosample type
129
tissue
84
primary cell
26
in vitro differentiated cells
8
cell line
Organ
118
brain
liver
7
epithelium
6
artery
6
blood vessel
6
heart
6
vasculature
3
pancreas
1
pituitary gland
Project
163
AMP
84
T1D
Genome assembly (visualization)
198
GRCh38
158
hg19
Lab
163
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
August, 2017
organ_slims!
liver
BIOSAMPLE
ASSAY
247 results
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Clear Filters
ChIP-seq
tissue
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
brain
14
cingulate gyrus
14
+ See 38 more…
primary cell
monocyte
84
in vitro differentiated cells
neural progenitor cell
20
cardiomyocytes
3
pancreatic PP cell
3
cell line
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
See all biosamples
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