Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
13
single cell RNA-seq
2
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
3
DNA accessibility
Date released
57
August, 2021
7
May, 2022
6
February, 2023
5
February, 2021
1
October, 2022
Available data
2898
bam
2705
bigWig
1612
bed narrowPeak
1361
tsv
1060
fastq
976
bigBed narrowPeak
310
tagAlign
277
bed broadPeak
266
bigBed broadPeak
234
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
75
Homo sapiens
Biosample type
73
tissue
2
in vitro differentiated cells
1
cell line
Organ
62
kidney
6
pancreas
4
bone element
4
skeleton
1
musculature of body
Project
76
AMP
Genome assembly (visualization)
3
hg19
Lab
57
Katalin Susztak, Upenn
11
AMP-T2D consortium
6
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
6
audit script error
month_released!
August, 2017
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
76 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
cell line
MIN6
1
See all biosamples
Download