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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
84
RNA microarray
61
total RNA-seq
13
single cell RNA-seq
8
ChIP-seq
5
Hi-C
2
pCHi-C
1
MPRA
1
snATAC-seq
Assay category
205
DNA accessibility
74
Transcription
8
DNA binding
5
3D chromatin structure
Target of assay
5
histone
5
histone modification
3
control
3
narrow histone mark
2
broad histone mark
Date released
187
June, 2019
91
February, 2021
60
August, 2021
August, 2017
9
November, 2018
8
October, 2019
7
May, 2022
4
February, 2023
4
July, 2019
3
December, 2017
2
May, 2021
2
September, 2017
1
November, 2020
1
October, 2022
Available data
2873
bam
2686
bigWig
1586
bed narrowPeak
1380
tsv
984
bigBed narrowPeak
984
fastq
287
tagAlign
281
bed broadPeak
270
bigBed broadPeak
222
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
378
Homo sapiens
Biosample type
335
tissue
37
primary cell
in vitro differentiated cells
4
cell line
3
stem cell
Organ
140
kidney
88
bone element
36
limb
35
brain
34
musculature of body
30
heart
21
epithelium
18
ureter
16
pancreas
13
vasculature
11
blood vessel
10
connective tissue
10
liver
4
artery
4
eye
4
skeleton
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
379
AMP
Genome assembly (visualization)
213
GRCh38
199
hg19
Lab
314
AMP-T2D consortium
57
Katalin Susztak, Upenn
8
Kyle Gaulton, UCSD
Audit category:
88
inconsistent ontology term
6
audit script error
Audit category:
2
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2017
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
379 results
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DNase-seq
RNA microarray
total RNA-seq
single cell RNA-seq
ChIP-seq
Hi-C
pCHi-C
MPRA
snATAC-seq
tissue
bone element
84
kidney
13
49
13
heart
18
muscle of arm
17
brain
14
+ See 46 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 19 more…
cell line
Panc1
1
1
HepG2
1
MIN6
1
stem cell
hESC
3
See all biosamples
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