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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
8
single cell RNA-seq
2
ATAC-seq
Assay category
63
Transcription
2
DNA accessibility
Date released
57
August, 2021
6
May, 2022
2
February, 2023
Available data
305
bigWig
273
bed narrowPeak
201
bam
195
fastq
153
zippedFastqFolder
108
tsv
84
tagAlign
65
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
cool
2
bed bedgraph
2
bed broadPeak
1
bedpe
1
vcf
Organism
65
Homo sapiens
Biosample type
63
tissue
2
in vitro differentiated cells
Organ
57
kidney
6
pancreas
Project
65
AMP
Genome assembly (visualization)
2
hg19
Lab
57
Katalin Susztak, Upenn
AMP-T2D consortium
6
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
month_released!
August, 2017
lab.title!
AMP-T2D consortium
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
65 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
tissue
kidney
49
8
islet of Langerhans
6
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
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