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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
Assay category
75
DNA binding
Target of assay
57
control
18
histone
18
histone modification
10
broad histone mark
8
narrow histone mark
Date released
August, 2017
23
May, 2020
23
November, 2017
9
October, 2019
8
August, 2021
8
October, 2017
3
February, 2021
1
May, 2021
Available data
3109
bam
2897
bigWig
bed narrowPeak
1511
tsv
1070
fastq
1000
bigBed narrowPeak
313
tagAlign
280
bed broadPeak
270
bigBed broadPeak
240
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
75
Homo sapiens
Biosample type
60
tissue
8
in vitro differentiated cells
6
cell line
1
primary cell
Organ
35
brain
27
liver
2
artery
2
blood vessel
2
epithelium
2
heart
2
vasculature
1
pancreas
Project
75
AMP
Genome assembly (visualization)
3
hg19
Lab
75
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
month_released!
August, 2017
lab.title!
Mark McCarthy, Oxford
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
75 results
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Clear Filters
ChIP-seq
tissue
liver
23
brain
8
cingulate gyrus
7
layer of hippocampus
4
substantia nigra
4
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
7
pancreatic PP cell
1
cell line
HepG2
3
smooth muscle cell of the coronary artery
2
iPSC derived cell line
1
primary cell
hepatocyte
1
See all biosamples
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