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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
Assay category
66
DNA binding
Target of assay
histone
247
histone modification
145
narrow histone mark
102
broad histone mark
57
control
9
transcription factor
Date released
23
May, 2020
August, 2017
11
November, 2017
9
October, 2019
8
August, 2021
8
February, 2021
5
May, 2021
2
October, 2017
Available data
2427
bam
2151
bigWig
1511
tsv
943
fastq
932
bed narrowPeak
639
bigBed narrowPeak
252
bed broadPeak
251
bigBed broadPeak
227
bed bed3+
161
txt
153
zippedFastqFolder
66
tagAlign
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
66
Homo sapiens
Biosample type
44
tissue
12
in vitro differentiated cells
9
cell line
1
primary cell
Organ
25
liver
19
brain
6
artery
6
blood vessel
6
heart
6
vasculature
3
epithelium
2
pancreas
Project
66
AMP
Genome assembly (visualization)
10
hg19
9
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
August, 2017
lab.title!
Mark McCarthy, Oxford
target.investigated_as!
histone
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
tissue
liver
23
brain
2
caudate nucleus
2
cingulate gyrus
2
layer of hippocampus
2
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
7
cardiomyocytes
3
pancreatic PP cell
2
cell line
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
HepG2
1
primary cell
hepatocyte
1
See all biosamples
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