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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
Assay category
26
DNA binding
Target of assay
818
histone
818
histone modification
426
narrow histone mark
403
transcription factor
392
broad histone mark
287
control
85
RNA binding protein
73
recombinant protein
26
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
15
November, 2017
November, 2018
6
January, 2019
August, 2017
3
December, 2017
2
December, 2018
Available data
26
bam
26
bed narrowPeak
26
bigBed narrowPeak
26
bigWig
26
fastq
4
bed broadPeak
4
bigBed broadPeak
Organism
26
Homo sapiens
Biosample type
23
cell line
2
tissue
1
in vitro differentiated cells
Organ
18
liver
8
blood
8
bodily fluid
1
epithelium
Project
26
AMP
Genome assembly (visualization)
26
hg19
24
GRCh38
Lab
26
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
month_released!
August, 2017
November, 2018
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
cell line
HepG2
15
GM12878
8
tissue
liver
2
in vitro differentiated cells
hepatocyte
1
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