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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ATAC-seq
109
ChIP-seq
102
single cell RNA-seq
57
total RNA-seq
29
DNase-seq
9
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
178
DNA accessibility
161
Transcription
109
DNA binding
10
DNA methylation
6
3D chromatin structure
Target of assay
85
histone
85
histone modification
43
narrow histone mark
42
broad histone mark
19
control
8
RNA binding protein
8
transcription factor
Date released
102
May, 2020
73
September, 2018
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
20
May, 2021
12
February, 2023
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
371
bam
342
bigWig
182
fastq
168
tsv
148
bed narrowPeak
90
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
4
tagAlign
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
465
Homo sapiens
Biosample type
2141
tissue
615
cell line
465
primary cell
272
in vitro differentiated cells
8
stem cell
Organ
225
epithelium
153
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
465
AMP
Genome assembly (visualization)
363
hg19
303
GRCh38
Lab
465
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
1
audit script error
Audit category:
32
missing controlled_by
month_released!
August, 2017
BIOSAMPLE
ASSAY
465 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic ductal cell
4
13
10
4
pancreatic acinar cell
4
8
12
4
pancreatic beta cell
6
12
10
pancreatic alpha cell
5
12
10
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
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