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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
218
ChIP-seq
197
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
9
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
256
DNA accessibility
218
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
194
histone
194
histone modification
104
broad histone mark
90
narrow histone mark
22
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
August, 2017
43
April, 2018
31
July, 2019
31
June, 2019
30
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
567
bigWig
551
bam
351
fastq
270
tsv
262
bed narrowPeak
153
zippedFastqFolder
90
bigBed narrowPeak
88
tagAlign
37
bed bed3+
bed broadPeak
35
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
994
Homo sapiens
Biosample type
2258
tissue
994
primary cell
603
cell line
283
in vitro differentiated cells
7
stem cell
Organ
355
epithelium
305
pancreas
33
connective tissue
26
kidney
25
vasculature
23
blood vessel
18
vein
13
musculature of body
12
liver
10
brain
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
465
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
553
hg19
461
GRCh38
Lab
430
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
31
audit script error
Audit category:
32
missing controlled_by
month_released!
August, 2017
December, 2017
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
994 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
34
12
31
1
pancreatic beta cell
21
22
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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