Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
504
ChIP-seq
189
total RNA-seq
21
ATAC-seq
5
DNase-seq
4
Hi-C
3
small RNA-seq
2
STARR-seq
2
WGBS
2
pCHi-C
1
RRBS
1
whole genome sequencing assay
Assay category
504
DNA binding
192
Transcription
26
DNA accessibility
4
3D chromatin structure
3
DNA methylation
1
DNA sequencing
Target of assay
334
transcription factor
97
control
82
recombinant protein
70
histone
70
histone modification
58
RNA binding protein
47
narrow histone mark
23
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
August, 2017
53
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
654
bam
604
bigWig
437
fastq
422
bed narrowPeak
352
bigBed narrowPeak
174
tsv
66
tagAlign
63
bed broadPeak
63
bigBed broadPeak
9
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
hdf5
1
vcf
Organism
734
Homo sapiens
Biosample type
399
cell line
306
tissue
15
in vitro differentiated cells
14
primary cell
Organ
734
liver
726
pancreas
463
epithelium
346
kidney
287
heart
286
brain
170
vasculature
164
blood vessel
116
limb
104
connective tissue
75
artery
70
musculature of body
69
blood
69
bodily fluid
61
eye
48
adipose tissue
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
734
AMP
Genome assembly (visualization)
603
hg19
511
GRCh38
Lab
663
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2017
February, 2021
BIOSAMPLE
ASSAY
734 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
STARR-seq
WGBS
pCHi-C
RRBS
whole genome sequencing assay
cell line
HepG2
378
14
2
2
1
1
1
tissue
liver
97
167
20
2
1
1
1
right lobe of liver
10
3
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
Download