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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1504
ChIP-seq
1444
total RNA-seq
526
ATAC-seq
363
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
66
WGBS
57
pCHi-C
34
Hi-C
20
DNase-seq
18
small RNA-seq
15
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
20
DNA accessibility
Date released
June, 2019
10
October, 2019
9
November, 2018
August, 2017
1
November, 2020
Available data
18
bam
18
bed narrowPeak
18
bigBed narrowPeak
18
bigWig
17
bed bed3+
17
bed broadPeak
17
bigBed broadPeak
9
fastq
Organism
20
Homo sapiens
Biosample type
13
tissue
5
primary cell
2
cell line
Organ
5
epithelium
4
blood vessel
4
limb
4
vasculature
3
kidney
3
liver
3
pancreas
2
artery
2
brain
2
connective tissue
2
nerve
2
vein
1
adipose tissue
1
spleen
Project
20
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
20
AMP-T2D consortium
month_released!
August, 2017
June, 2019
BIOSAMPLE
ASSAY
20 results
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DNase-seq
tissue
body of pancreas
2
brain
2
liver
2
tibial artery
2
tibial nerve
2
+ See 3 more…
primary cell
endothelial cell of umbilical vein
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
osteoblast
1
cell line
Panc1
1
glomerular visceral epithelial cell
1
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