Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
52
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
88
DNA binding
54
Transcription
37
DNA accessibility
4
3D chromatin structure
Target of assay
54
histone
54
histone modification
28
narrow histone mark
26
broad histone mark
23
control
11
transcription factor
2
RNA binding protein
1
chromatin remodeller
Date released
May, 2021
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
152
bam
122
bigWig
87
fastq
84
bed narrowPeak
52
tsv
20
tagAlign
18
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
194
Homo sapiens
Biosample type
2413
tissue
823
primary cell
641
cell line
194
in vitro differentiated cells
10
stem cell
Organ
28
connective tissue
27
embryo
19
epithelium
15
liver
1
adipose tissue
Project
194
AMP
Genome assembly (visualization)
159
hg19
132
GRCh38
4
hg18
Lab
187
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
47
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
August, 2017
May, 2021
BIOSAMPLE
ASSAY
194 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
15
adipocyte
5
8
1
+ See 18 more…
See all biosamples
Download