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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
226
ChIP-seq
158
ATAC-seq
154
single cell RNA-seq
35
snATAC-seq
29
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
403
Transcription
226
DNA binding
223
DNA accessibility
16
DNA methylation
10
3D chromatin structure
Target of assay
199
histone
199
histone modification
106
broad histone mark
93
narrow histone mark
22
control
8
RNA binding protein
8
transcription factor
Date released
206
May, 2021
147
May, 2020
May, 2022
88
February, 2023
73
September, 2018
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
567
bigWig
551
bam
351
fastq
270
tsv
262
bed narrowPeak
90
bigBed narrowPeak
88
tagAlign
37
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
19
zippedFastqFolder
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
895
Homo sapiens
Biosample type
2427
tissue
895
primary cell
662
cell line
326
in vitro differentiated cells
10
stem cell
Organ
297
epithelium
225
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
500
AMP
204
T1D
190
HPAP
1
ITG
Genome assembly (visualization)
581
hg19
494
GRCh38
Lab
465
AMP-T2D consortium
239
Kyle Gaulton, UCSD
190
Klaus Kaestner, Upenn
1
ITG
Audit category:
54
inconsistent ontology term
31
audit script error
Audit category:
32
missing controlled_by
month_released!
August, 2017
May, 2022
BIOSAMPLE
ASSAY
895 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
12
12
1
6
Langerhans cell
52
27
pancreatic beta cell
21
9
12
1
CD8-positive, alpha-beta T cell
4
33
2
1
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