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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
17
ChIP-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
RRBS
1
WGBS
1
pCHi-C
Assay category
34
DNA accessibility
17
DNA binding
8
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
3
control
Date released
43
June, 2019
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
May, 2022
1
January, 2018
Available data
57
bam
55
bigWig
47
bed narrowPeak
47
bigBed narrowPeak
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
9
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
Organism
68
Homo sapiens
Biosample type
54
tissue
14
primary cell
Organ
647
pancreas
644
liver
558
connective tissue
433
adipose tissue
415
epithelium
393
heart
354
kidney
284
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
68
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
68
AMP
Genome assembly (visualization)
57
hg19
53
GRCh38
Lab
68
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
month_released!
August, 2017
May, 2022
November, 2018
BIOSAMPLE
ASSAY
68 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
RRBS
WGBS
pCHi-C
tissue
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
skeletal muscle tissue
1
1
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
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