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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
DNase-seq
75
ChIP-seq
2
ATAC-seq
Assay category
205
DNA accessibility
75
DNA binding
Target of assay
47
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
70
November, 2017
August, 2017
9
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
November, 2020
Available data
3104
bam
2892
bigWig
1673
bed narrowPeak
1507
tsv
1044
fastq
999
bigBed narrowPeak
313
tagAlign
280
bed broadPeak
269
bigBed broadPeak
238
bed bed3+
160
txt
132
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
280
Homo sapiens
Biosample type
187
tissue
59
cell line
34
primary cell
Organ
78
kidney
63
liver
47
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
pancreas
7
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
280
AMP
Genome assembly (visualization)
262
GRCh38
256
hg19
Lab
278
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
month_released!
August, 2017
November, 2020
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
280 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
58
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 16 more…
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