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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
711
ChIP-seq
196
DNase-seq
19
ATAC-seq
3
FAIRE-seq
Assay category
711
DNA binding
218
DNA accessibility
Target of assay
403
transcription factor
303
histone
303
histone modification
186
broad histone mark
117
narrow histone mark
91
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
312
November, 2017
210
June, 2019
97
May, 2019
73
November, 2018
October, 2019
64
April, 2019
50
December, 2017
45
October, 2018
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
November, 2020
Available data
2854
bam
2685
bigWig
1491
tsv
1484
bed narrowPeak
1071
fastq
929
bigBed narrowPeak
271
bed broadPeak
264
tagAlign
260
bigBed broadPeak
231
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
929
Homo sapiens
Biosample type
492
tissue
347
cell line
76
primary cell
14
in vitro differentiated cells
Organ
352
liver
127
brain
103
kidney
94
heart
67
pancreas
59
epithelium
54
blood
54
bodily fluid
50
vasculature
47
musculature of body
46
blood vessel
38
limb
21
connective tissue
18
ureter
13
spleen
7
adipose tissue
6
eye
5
artery
Project
929
AMP
Genome assembly (visualization)
893
GRCh38
850
hg19
Lab
929
AMP-T2D consortium
Audit category:
28
inconsistent control
24
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2017
November, 2020
October, 2019
BIOSAMPLE
ASSAY
929 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
33
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
heart
7
18
+ See 49 more…
cell line
HepG2
293
GM12878
54
primary cell
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
pancreatic beta cell
6
kidney epithelial cell
4
1
+ See 21 more…
in vitro differentiated cells
hepatocyte
14
See all biosamples
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