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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ATAC-seq
25
total RNA-seq
17
ChIP-seq
2
Hi-C
Assay category
26
DNA accessibility
25
Transcription
17
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
6
control
4
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
715
February, 2021
399
May, 2021
August, 2017
341
May, 2020
319
August, 2021
244
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
106
July, 2019
94
November, 2017
64
March, 2020
61
November, 2019
59
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
44
December, 2017
40
May, 2024
39
February, 2018
31
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
16
January, 2021
15
May, 2023
15
November, 2018
15
November, 2020
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
89
bam
58
bed narrowPeak
57
bigWig
30
fastq
25
tsv
bigBed narrowPeak
2
bedpe bed3+
2
hic
Organism
70
Homo sapiens
Biosample type
41
tissue
24
cell line
5
in vitro differentiated cells
Organ
55
pancreas
16
epithelium
5
liver
3
blood
3
bodily fluid
1
adipose tissue
1
connective tissue
1
spleen
Project
70
AMP
Genome assembly (visualization)
64
hg19
62
GRCh38
Lab
70
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
month_released!
August, 2017
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
70 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
19
19
1
adipose tissue(adipose white tissue)
1
spleen
1
cell line
EndoC_BH1
1
1
13
1
HepG2
5
GM12878
3
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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