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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
115
total RNA-seq
34
ATAC-seq
pCHi-C
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
115
Transcription
44
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
218
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
8
January, 2021
Available data
220
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
318
Homo sapiens
Biosample type
215
primary cell
51
tissue
47
in vitro differentiated cells
5
cell line
Organ
51
pancreas
8
blood
bodily fluid
Project
211
T1D
107
AMP
Genome assembly (visualization)
238
hg19
180
GRCh38
Lab
3400
AMP-T2D consortium
324
Klaus Kaestner, Upenn
318
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
month_released!
August, 2017
organ_slims!
bodily fluid
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
318 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 20 more…
tissue
islet of Langerhans
11
29
6
pancreas
1
4
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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