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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
17
pCHi-C
11
ATAC-seq
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
105
Transcription
21
DNA accessibility
Date released
68
May, 2021
45
May, 2020
23
February, 2023
8
January, 2021
4
March, 2020
Available data
186
bam
186
bigWig
98
tsv
bed narrowPeak
84
tagAlign
Organism
148
Homo sapiens
Biosample type
112
primary cell
29
tissue
7
cell line
Organ
30
pancreas
8
blood
bodily fluid
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2287
AMP
324
HPAP
148
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
144
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
month_released!
August, 2017
organ_slims!
bodily fluid
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
148 results
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total RNA-seq
pCHi-C
ATAC-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
tissue
islet of Langerhans
7
11
6
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
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