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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
Assay category
195
DNA binding
Target of assay
148
histone
148
histone modification
91
narrow histone mark
57
broad histone mark
38
control
9
transcription factor
Date released
90
May, 2021
August, 2017
50
May, 2020
24
August, 2021
12
November, 2017
11
October, 2019
8
February, 2021
Available data
2867
bam
2675
bigWig
1485
tsv
1472
bed narrowPeak
1050
fastq
873
bigBed narrowPeak
234
bed broadPeak
232
bigBed broadPeak
205
bed bed3+
195
tagAlign
161
txt
153
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
bedpe bed3+
23
hic
11
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
195
Homo sapiens
Biosample type
88
primary cell
61
tissue
26
in vitro differentiated cells
20
cell line
Organ
brain
66
liver
7
epithelium
6
artery
6
blood vessel
6
heart
6
vasculature
3
pancreas
1
pituitary gland
Project
111
AMP
84
T1D
Genome assembly (visualization)
157
hg19
147
GRCh38
Lab
111
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
11
inconsistent control read length
month_released!
August, 2017
organ_slims!
brain
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
195 results
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Clear Filters
ChIP-seq
primary cell
monocyte
84
hepatocyte
4
tissue
liver
50
gyrus rectus
2
white matter
2
cuneus
1
inferior temporal gyrus
1
+ See 5 more…
in vitro differentiated cells
neural progenitor cell
20
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
See all biosamples
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