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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
DNase-seq
66
ATAC-seq
60
ChIP-seq
Assay category
238
DNA accessibility
60
DNA binding
Target of assay
44
transcription factor
16
histone
16
histone modification
10
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
157
June, 2019
64
August, 2021
58
November, 2017
August, 2017
9
October, 2019
7
November, 2018
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2867
bam
2675
bigWig
1485
tsv
1472
bed narrowPeak
1050
fastq
873
bigBed narrowPeak
234
bed broadPeak
232
bigBed broadPeak
205
bed bed3+
195
tagAlign
161
txt
153
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
23
bedpe bed3+
23
hic
11
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
298
Homo sapiens
Biosample type
215
tissue
59
cell line
24
primary cell
Organ
142
kidney
63
liver
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
pancreas
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
298
AMP
Genome assembly (visualization)
281
GRCh38
220
hg19
Lab
232
AMP-T2D consortium
64
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
month_released!
August, 2017
organ_slims!
brain
BIOSAMPLE
ASSAY
298 results
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DNase-seq
ATAC-seq
ChIP-seq
tissue
kidney
13
64
heart
18
muscle of arm
17
muscle of leg
13
renal cortex interstitium
11
+ See 27 more…
cell line
HepG2
58
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac muscle cell
1
+ See 12 more…
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