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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
15
WGBS
13
RRBS
Assay category
64
DNA accessibility
28
DNA methylation
Date released
64
August, 2021
21
July, 2019
7
November, 2018
August, 2017
Available data
2867
bam
2675
bigWig
1485
tsv
1472
bed narrowPeak
1050
fastq
873
bigBed narrowPeak
234
bed broadPeak
232
bigBed broadPeak
205
bed bed3+
195
tagAlign
161
txt
153
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
23
bedpe bed3+
23
hic
11
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
92
Homo sapiens
Biosample type
83
tissue
8
primary cell
1
cell line
Organ
68
kidney
8
heart
6
epithelium
6
pancreas
brain
2
liver
2
musculature of body
2
spleen
2
vasculature
1
blood vessel
1
connective tissue
1
eye
1
limb
1
pericardium
Project
92
AMP
Genome assembly (visualization)
79
GRCh38
13
hg19
Lab
64
Katalin Susztak, Upenn
28
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
August, 2017
organ_slims!
brain
BIOSAMPLE
ASSAY
92 results
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ATAC-seq
WGBS
RRBS
tissue
kidney
64
1
heart left ventricle
2
1
pancreas
2
1
body of pancreas
2
heart right ventricle
2
+ See 7 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 3 more…
cell line
HepG2
1
See all biosamples
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