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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
total RNA-seq
85
ChIP-seq
62
ATAC-seq
11
snATAC-seq
8
single cell RNA-seq
7
DNase-seq
5
Hi-C
4
MeRIP-seq
4
WGBS
2
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
210
Transcription
85
DNA binding
81
DNA accessibility
6
DNA methylation
5
3D chromatin structure
Target of assay
51
histone
51
histone modification
30
broad histone mark
26
control
21
narrow histone mark
10
transcription factor
6
RNA binding protein
2
nucleotide modification
Date released
August, 2017
126
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
18
October, 2019
11
September, 2018
9
March, 2020
8
April, 2018
8
January, 2021
7
November, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
335
bam
270
bigWig
194
tsv
109
bed narrowPeak
104
fastq
55
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
392
Homo sapiens
Biosample type
358
tissue
19
primary cell
15
cell line
Organ
758
pancreas
737
liver
559
connective tissue
epithelium
434
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
70
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
362
AMP
30
T1D
Genome assembly (visualization)
310
hg19
290
GRCh38
Lab
329
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
11
missing controlled_by
Audit category:
1
inconsistent assembly
1
inconsistent control read length
month_released!
August, 2017
organ_slims!
epithelium
BIOSAMPLE
ASSAY
392 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
MeRIP-seq
WGBS
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
islet of Langerhans
195
8
58
7
3
4
1
body of pancreas
3
35
4
4
2
2
endocrine pancreas
16
pancreas
2
2
4
2
1
2
1
1
1
primary cell
pancreatic endocrine cell
11
pancreatic stellate cell
4
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
cell line
Panc1
13
1
1
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