Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
33
DNase-seq
9
snATAC-seq
6
Hi-C
6
total RNA-seq
2
ATAC-seq
2
small RNA-seq
1
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
77
DNA binding
44
DNA accessibility
9
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
51
transcription factor
15
histone
15
histone modification
10
RNA binding protein
10
chromatin remodeller
9
control
8
broad histone mark
7
narrow histone mark
Date released
43
June, 2019
27
December, 2018
August, 2017
18
January, 2019
15
November, 2018
10
July, 2019
8
January, 2021
7
May, 2019
5
March, 2020
2
February, 2020
2
January, 2018
2
May, 2022
Available data
117
bam
110
bigWig
101
bed narrowPeak
101
bigBed narrowPeak
60
fastq
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
9
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
txt
Organism
139
Homo sapiens
Biosample type
61
cell line
56
tissue
22
primary cell
Organ
758
pancreas
737
liver
559
connective tissue
495
epithelium
434
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
70
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
131
AMP
8
T1D
Genome assembly (visualization)
113
hg19
107
GRCh38
Lab
131
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
1
inconsistent control
month_released!
August, 2017
BIOSAMPLE
ASSAY
139 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
snATAC-seq
Hi-C
total RNA-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
cell line
GM12878
60
1
tissue
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
skeletal muscle tissue
1
1
1
1
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
8
1
1
peripheral blood mononuclear cell
8
skeletal muscle cell
2
1
1
See all biosamples
Download