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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
504
ChIP-seq
189
total RNA-seq
22
ATAC-seq
5
DNase-seq
3
pCHi-C
3
small RNA-seq
2
STARR-seq
2
WGBS
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
504
DNA binding
193
Transcription
27
DNA accessibility
3D chromatin structure
3
DNA methylation
1
DNA sequencing
Target of assay
334
transcription factor
97
control
82
recombinant protein
70
histone
70
histone modification
58
RNA binding protein
47
narrow histone mark
23
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
August, 2017
53
November, 2018
40
May, 2022
34
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
2
June, 2019
2
March, 2020
1
February, 2020
Available data
655
bam
603
bigWig
436
fastq
423
bed narrowPeak
352
bigBed narrowPeak
174
tsv
66
tagAlign
63
bed broadPeak
63
bigBed broadPeak
9
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
csv
1
vcf
Organism
733
Homo sapiens
Biosample type
399
cell line
306
tissue
15
in vitro differentiated cells
13
primary cell
Organ
749
pancreas
733
liver
558
connective tissue
487
epithelium
434
adipose tissue
353
kidney
350
heart
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
69
blood
69
bodily fluid
64
musculature of body
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
733
AMP
Genome assembly (visualization)
602
hg19
512
GRCh38
Lab
663
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2017
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
733 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
STARR-seq
WGBS
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
1
1
tissue
liver
97
167
20
2
1
1
1
right lobe of liver
10
3
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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