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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
570
ChIP-seq
196
total RNA-seq
41
DNase-seq
30
ATAC-seq
8
Hi-C
3
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
570
DNA binding
200
Transcription
71
DNA accessibility
8
3D chromatin structure
4
DNA methylation
1
DNA sequencing
Target of assay
334
transcription factor
119
histone
119
histone modification
114
control
82
recombinant protein
62
narrow histone mark
58
RNA binding protein
57
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
76
October, 2019
63
December, 2017
August, 2017
53
November, 2018
40
May, 2022
35
August, 2021
34
June, 2019
15
July, 2019
9
February, 2021
7
May, 2019
5
December, 2019
5
January, 2019
4
February, 2020
3
March, 2020
1
December, 2018
Available data
769
bam
695
bigWig
515
bed narrowPeak
437
fastq
436
bigBed narrowPeak
181
tsv
99
bed broadPeak
99
bigBed broadPeak
66
tagAlign
46
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
859
Homo sapiens
Biosample type
429
tissue
401
cell line
15
in vitro differentiated cells
14
primary cell
Organ
758
pancreas
737
liver
559
connective tissue
495
epithelium
434
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
70
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
859
AMP
Genome assembly (visualization)
701
hg19
608
GRCh38
Lab
788
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2017
BIOSAMPLE
ASSAY
859 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
97
167
2
20
1
1
1
1
tibial nerve
35
5
2
1
tibial artery
23
1
2
1
muscle of leg
7
13
1
muscle of arm
17
+ See 11 more…
cell line
HepG2
378
14
1
2
1
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
See all biosamples
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