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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
DNase-seq
34
ChIP-seq
8
Hi-C
7
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
38
DNA accessibility
34
DNA binding
10
Transcription
8
3D chromatin structure
2
DNA methylation
Target of assay
29
histone
29
histone modification
17
broad histone mark
12
narrow histone mark
5
control
Date released
43
June, 2019
August, 2017
21
October, 2019
10
July, 2019
7
May, 2019
6
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
77
bam
70
bigWig
60
bed narrowPeak
60
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
36
bed bed3+
10
tsv
4
hic
3
bedpe bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
tar
1
txt
Organism
93
Homo sapiens
Biosample type
57
tissue
36
primary cell
Organ
758
pancreas
737
liver
559
connective tissue
495
epithelium
434
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
70
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
93
AMP
Genome assembly (visualization)
75
hg19
65
GRCh38
Lab
93
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
2
audit script error
month_released!
August, 2017
BIOSAMPLE
ASSAY
93 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
FAIRE-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
skeletal muscle tissue
1
1
1
1
1
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primary cell
endothelial cell of umbilical vein
2
17
2
1
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
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