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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
Assay category
34
DNA binding
Target of assay
21
histone
21
histone modification
19
transcription factor
12
broad histone mark
11
chromatin remodeller
9
narrow histone mark
RNA binding protein
1
recombinant protein
Date released
August, 2017
16
November, 2017
11
December, 2017
4
November, 2018
2
February, 2018
1
October, 2018
Available data
34
bam
34
bigWig
34
fastq
32
bed narrowPeak
19
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
11
tagAlign
6
bed bed3+
Organism
34
Homo sapiens
Biosample type
20
cell line
11
in vitro differentiated cells
2
stem cell
1
tissue
Organ
20
liver
3
embryo
1
epithelium
1
pancreas
Project
34
AMP
Genome assembly (visualization)
34
hg19
31
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
34
inconsistent control read length
5
inconsistent control run_type
1
inconsistent assembly
month_released!
August, 2017
target.investigated_as!
RNA binding protein
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
cell line
HepG2
20
in vitro differentiated cells
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
Hepatic endoderm
1
stem cell
hESC
2
tissue
body of pancreas
1
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