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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
20
ChIP-seq
5
Hi-C
4
ATAC-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
20
DNA binding
Target of assay
13
histone
13
histone modification
7
control
7
narrow histone mark
6
broad histone mark
Date released
August, 2017
15
December, 2017
3
August, 2021
2
September, 2017
Available data
1397
bam
1219
bigWig
1193
bed narrowPeak
769
bigBed narrowPeak
676
fastq
313
tagAlign
75
bed broadPeak
66
bigBed broadPeak
20
bed bed3+
3
tar
1
tagAlign bed3+
Organism
20
Homo sapiens
Biosample type
12
in vitro differentiated cells
3
primary cell
3
stem cell
2
tissue
Organ
3
embryo
3
epithelium
3
liver
2
pancreas
Project
20
AMP
Genome assembly (visualization)
20
GRCh38
20
hg19
Lab
20
AMP-T2D consortium
Audit category:
6
inconsistent control read length
month_released!
August, 2017
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
in vitro differentiated cells
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
primary cell
hepatocyte
3
stem cell
hESC
3
tissue
islet of Langerhans
2
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