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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
1
Hi-C
Assay category
3
DNA binding
1
3D chromatin structure
Target of assay
2
broad histone mark
2
histone
2
histone modification
1
chromatin remodeller
1
transcription factor
Date released
2
August, 2017
1
November, 2017
1
October, 2019
Available data
4
bigWig
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
fastq
2
bed broadPeak
2
tagAlign
1
bed bed3+
1
bigBed broadPeak
1
hdf5
Organism
3
Homo sapiens
Biosample type
2
cell line
1
primary cell
1
tissue
Organ
2
pancreas
1
liver
Project
4
AMP
Genome assembly (visualization)
4
hg19
3
GRCh38
Lab
4
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
month_released!
August, 2018
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
4 results
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ChIP-seq
Hi-C
cell line
HepG2
1
Panc1
1
primary cell
skeletal muscle myoblast
1
tissue
pancreas
1
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